dacapo.experiments.tasks.affinities_task_config
===============================================

.. py:module:: dacapo.experiments.tasks.affinities_task_config


Classes
-------

.. autoapisummary::

   dacapo.experiments.tasks.affinities_task_config.AffinitiesTaskConfig


Module Contents
---------------

.. py:class:: AffinitiesTaskConfig



   This is a Affinities task config used for generating and
   evaluating voxel affinities for instance segmentations.

   .. attribute:: neighborhood

      A list of Coordinate objects.

   .. attribute:: lsds

      Whether or not to train lsds along with your affinities.

   .. attribute:: num_lsd_voxels

      The number of voxels to use for the lsd center of mass calculation.

   .. attribute:: downsample_lsds

      The factor by which to downsample the lsds.

   .. attribute:: lsds_to_affs_weight_ratio

      If training with lsds, set how much they should be weighted compared to affs.

   .. attribute:: affs_weight_clipmin

      The minimum value for affinities weights.

   .. attribute:: affs_weight_clipmax

      The maximum value for affinities weights.

   .. attribute:: lsd_weight_clipmin

      The minimum value for lsds weights.

   .. attribute:: lsd_weight_clipmax

      The maximum value for lsds weights.

   .. attribute:: background_as_object

      Whether to treat the background as a separate object.

   .. method:: verify(self) -> Tuple[bool, str]

      This method verifies the AffinitiesTaskConfig

   .. rubric:: Notes

   This is a subclass of TaskConfig.


   .. py:attribute:: task_type


   .. py:attribute:: neighborhood
      :type:  List[funlib.geometry.Coordinate]


   .. py:attribute:: lsds
      :type:  bool


   .. py:attribute:: num_lsd_voxels
      :type:  int


   .. py:attribute:: downsample_lsds
      :type:  int


   .. py:attribute:: lsds_to_affs_weight_ratio
      :type:  float


   .. py:attribute:: affs_weight_clipmin
      :type:  float


   .. py:attribute:: affs_weight_clipmax
      :type:  float


   .. py:attribute:: lsd_weight_clipmin
      :type:  float


   .. py:attribute:: lsd_weight_clipmax
      :type:  float


   .. py:attribute:: background_as_object
      :type:  bool