`dacapo.experiments.datasplits.datasets.arrays.numpy_array`

Module Contents

Classes

This is just a wrapper for a numpy array to make it fit the DaCapo Array interface.

class dacapo.experiments.datasplits.datasets.arrays.numpy_array.NumpyArray(array_config)

This is just a wrapper for a numpy array to make it fit the DaCapo Array interface.

property attrs: Return a dictionary of metadata attributes stored on this array.

property axes

Returns the axes of this dataset as a string of charactes, as they are indexed. Permitted characters are:

zyx for spatial dimensions

c for channels

s for samples

property dims: Returns the number of spatial dimensions.

property voxel_size: The size of a voxel in physical units.

property roi: The total ROI of this array, in world units.

property writable: bool: Can we write to this Array?

property data: Get a numpy like readable and writable view into this array.

property dtype: The dtype of this array, in numpy dtypes

property num_channels: The number of channels provided by this dataset. Should return None if the channel dimension doesn’t exist.

classmethod from_gp_array(array: gunpowder.Array)

classmethod from_np_array(array: numpy.ndarray, roi, voxel_size, axes)